Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015799754.1_cds_XP_016466576.1_5888
CDS Infomation

[gene=LOC107789313] [db_xref=GeneID:107789313] [protein=probable polygalacturonase] [protein_id=XP_016466576.1] [location=complement(join(31375..31900,32060..32213,32492..32740,33090..33210,36892..37332))] [gbkey=CDS]
Sequence

ATGGTGGAGACTCTAACGCTAACGCCGTCGTCTTCATGGCGGTGGACTCAATTCCACCAC
CAACGTCGATGGATCCCTCCACTATTCTCCAACCAAAAAACCCTTTTCACCGCTCTTTGG
ATCGCCTTTATATTTTCTGTTTTATATTGGCAAAGGGATGTTACTACCGGGCTCTTGTTT
TTCCGGCGGGATTTCTCGGTAAGGCAGATGCCTAAGCTCCGTCCAATGGCGTTTAACTTA
ACGGACTTTGGTGGAGTTGGTGACGGCGTTACATTCAATACGGCAGCGTTTGAGAGGGCA
GTCTTGGCTATTTCCAAACTTGGTAAGAAAGGTGGTGGGCAGCTTAATGTGCCACCTGGC
TATTGGTTAACGGCGCCGTTTAATTTAACCAGTCATATGACTCTGTTCCTTGCTGAAGGT
GCTGTTATATTGGGTATTGATGATGAGAAGTACTGGCCTCTCATGCCTCCCTTGCCTTCG
TATGGATATGGGCGAGAGCATATTGGACCACGCTATGGGAGTTTAATCCATGGCCAAAAT
CTCAGAGATGTTGTAATCACAGGGCATAATGGTACCATTAATGGGCAGGGTCAAACATGG
TGGAAGAAGTACAAGCAAAGGCTTCTTAACAACACCAGAGGGCCGCTTGTCCAGATTATG
TGGTCTAGTGACATAGTGATCTCTAATATAACATTACGCGATTCTCCATTTTGGACGCTC
CATCCATACGACTGCAAGAATGTAACAATCAAGAATGTCACAATTCTGGCACCCATCTTT
CATGCTCCAAATACTGATGGCATAGATCCAGATTCATGTGAAGATATGTTGATCGAGAAC
TGTTACATCAGTGTTGGTGATGATGGCATTGCAATAAAGAGTGGTTGGGATCAGTATGGA
ATTTCGTATGGACGGCCTTCAAAAAATATAGTCATCCGAAATCTTGTAGTTCGTTCAATG
GTCAGTGCGGGCATATCGATAGGAAGTGAGATGTCTGGTGGGGTATCAAATGTCATCGTG
GAAAATGTCCATGTCTGGAACTCAAGGCGGGCTGTTCGCATCAAAACAGCAGCTGGTAGA
GGAGGATACGTACGACACATAGCATACAGGAATTTAACTTTTGAAAATGTTAGGGTGGGA
ATTGTCATCAAAACAGATTACAATGAACATCCTGATGGGGAGTTTGATCCCAAAGCTGTA
CCAGTACTAAAGGACATAAGCTACGAGTCAATACACGGTGAGGGAGTTCGTGTGCCTGTT
CGTATCCATGGAAATTCAGAAATTCCAGTGAAAAATGTTACTTTCAGAGATATGTCGATT
GGGATAACATACAAGAAGAAGCACATATTCCAGTGTGCTTATGTTCAAGGTCGTGTTATA
GGTACTGTCTTCCCTGCCCCTTGTGAGAACCTTGACCTATACGACGAGCGAGGACATCTG
ATACGACGTTCTGATTCTCAGAATGCATCGGACGTAGATTACGACTTCTGA

Peptide Sequence

PEP ID

XP_016466576.1
PEP Infomation

PREDICTED: probable polygalacturonase [Nicotiana tabacum]
Sequence

MVETLTLTPSSSWRWTQFHHQRRWIPPLFSNQKTLFTALWIAFIFSVLYWQRDVTTGLLF
FRRDFSVRQMPKLRPMAFNLTDFGGVGDGVTFNTAAFERAVLAISKLGKKGGGQLNVPPG
YWLTAPFNLTSHMTLFLAEGAVILGIDDEKYWPLMPPLPSYGYGREHIGPRYGSLIHGQN
LRDVVITGHNGTINGQGQTWWKKYKQRLLNNTRGPLVQIMWSSDIVISNITLRDSPFWTL
HPYDCKNVTIKNVTILAPIFHAPNTDGIDPDSCEDMLIENCYISVGDDGIAIKSGWDQYG
ISYGRPSKNIVIRNLVVRSMVSAGISIGSEMSGGVSNVIVENVHVWNSRRAVRIKTAAGR
GGYVRHIAYRNLTFENVRVGIVIKTDYNEHPDGEFDPKAVPVLKDISYESIHGEGVRVPV
RIHGNSEIPVKNVTFRDMSIGITYKKKHIFQCAYVQGRVIGTVFPAPCENLDLYDERGHL
IRRSDSQNASDVDYDF

Transcript Sequence

Gene sequence data has not been registered.